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mus musculus
•
reset
0
votes
0
replies
3.3k
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build TSS from biomaRt for ChIPpeakAnno, how to decide the mm9 and mm10 assembly?
Mus musculus
biomaRt
ChIPpeakAnno
Mus musculus
biomaRt
ChIPpeakAnno
11.2 years ago
Julie Zhu
★ 4.3k
0
votes
0
replies
2.1k
views
Bioconductor Digest, Vol 121, Issue 13
RNASeq
Microarray
Normalization
GO
Classification
Clustering
Cancer
Mus musculus
probe
GO
11.2 years ago
Matthew Thornton
▴ 350
0
votes
2
replies
1.9k
views
BSgenome.Mmusculus.UCSC.mm10 and upstream sequences.
Mus musculus
BSgenome
BSgenome
Mus musculus
BSgenome
BSgenome
updated 10.5 years ago by
Hervé Pagès
16k • written 10.5 years ago by
Diego Diez
▴ 760
0
votes
2
replies
1.8k
views
GenomeinfoDB
Mus musculus
GenomeInfoDb
Mus musculus
GenomeInfoDb
updated 9.9 years ago by
Sonali Arora
▴ 390 • written 9.9 years ago by
Guest User
★ 13k
0
votes
1
reply
1.6k
views
GenomeGraphs/biomaRt/getBM on older genome builds
Mus musculus
biomaRt
GenomeGraphs
Mus musculus
biomaRt
GenomeGraphs
updated 14.9 years ago by
steffen@stat.Berkeley.EDU
▴ 600 • written 14.9 years ago by
Mark Robinson
★ 1.1k
0
votes
1
reply
1.5k
views
decideTests and topTable
Microarray
Mus musculus
limma
Microarray
Mus musculus
limma
updated 19.1 years ago by
Gordon Smyth
50k • written 19.1 years ago by
Humberto Ortiz Zuazaga
▴ 10
0
votes
2
replies
1.4k
views
lumiR returns ExpressionSet object instead of LumiBatch
GO
Mus musculus
BSgenome
BSgenome
lumi
GO
Mus musculus
BSgenome
BSgenome
lumi
updated 10.9 years ago by
Pan Du
▴ 440 • written 10.9 years ago by
Guest User
★ 13k
0
votes
2
replies
1.3k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
GO
Mus musculus
PROcess
topGO
GO
Mus musculus
PROcess
topGO
updated 14.2 years ago by
Sean Davis
21k • written 14.2 years ago by
Dick Beyer
★ 1.4k
0
votes
0
replies
1.2k
views
mistmatch in GO terms between topGO_1.14.0 and org.Mm.eg.db_2.3.6
Annotation
GO
Mus musculus
PROcess
topGO
Annotation
GO
Mus musculus
PROcess
topGO
14.2 years ago
Dick Beyer
★ 1.4k
1
vote
3
replies
1.2k
views
biomaRT biotype TFs only
biomart
TF
biotype
ensembl
mus musculus
updated 6.3 years ago by
Mike Smith
★ 6.5k • written 6.3 years ago by
rbronste
▴ 60
0
votes
1
reply
1.2k
views
organism = mouse or Mus Musculus in AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
Microarray
Organism
Mus musculus
AnnBuilder
updated 18.9 years ago by
John Zhang
★ 2.9k • written 18.9 years ago by
Christopher Wilkinson
▴ 140
0
votes
0
replies
1.2k
views
confusion about nomenclature of illumina annotationpackages
BiocViews
Annotation
Cancer
Mus musculus
illuminaHumanv1
illuminaHumanv2
probe
annotate
15.8 years ago
Lynn Amon
▴ 280
0
votes
0
replies
1.1k
views
control probes and missing annotations in Affy Mouse Gene 1.0 ST arrays
Annotation
Mus musculus
probe
affy
Annotation
Mus musculus
probe
affy
14.4 years ago
Robert Castelo
★ 3.3k
0
votes
1
reply
973
views
How to download All Protein Protein Interactions of an organism with Bioconductor
ppi
stringdb
mus musculus
updated 6.1 years ago by
damian.szk
▴ 80 • written 6.1 years ago by
hkarakurt
▴ 20
14 results • Page
1 of 1
Recent ...
Replies
Comment: Extremely small p-values using Limma for proteomic data
by
James W. MacDonald
65k
If you ever find yourself using the `@` function, you should reconsider what you are doing. There are vanishingly small instances when an e…
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Michael Love
42k
Here is some example code <https://gist.github.com/mikelove/cbbc84634b6854c865cb5eb08ad9b245>
Comment: How to use spike-in information (sequences from another species) with DESeq2::DE
by
maria.soler
• 0
Hi, I have a question barely related to this topic. Do you use a custom reference genome combining your organism and the one used as a spik…
Answer: Differential gene expression analysis results
by
ATpoint
★ 4.1k
Pease do not open multiple posts for the same issue: https://support.bioconductor.org/p/9158194/#9158222 The support site is not meant f…
Comment: deseq2 results
by
sajadahmad41454
• 0
thank you for your response, should i remove or discard that sample? since the red outlier on left represents one of healthy samples.
Votes
Comment: Extremely small p-values using Limma for proteomic data
Comment: Log-cpm values from limma
Comment: Log-cpm values from limma
Comment: deseq2 results
Comment: deseq2 results
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